A new phage-typing scheme for Salmonella typhi-murium. (World Health Organization, Geneva, 2007).Ĭallow, B. Antigenic Formulae of the Salmonella Serovars 9th edn. Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Long-read, whole genome shotgun sequence data for five model organisms. A first look at the Oxford Nanopore MinION sequencer. A reference bacterial genome dataset generated on the MinION portable single-molecule nanopore sequencer. Poretools: a toolkit for analyzing nanopore sequence data. poRe: an R package for the visualization and analysis of nanopore sequencing data. The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Parameters for accurate genome alignment. Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever. Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004. Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. High-resolution genotyping of the endemic Salmonella Typhi population during a Vi (typhoid) vaccination trial in Kolkata. Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam. Typhoid in Kenya is associated with a dominant multidrug-resistant Salmonella enterica serovar Typhi haplotype that is also widespread in Southeast Asia. Evolutionary history of Salmonella typhi. Wain, J., Hendriksen, R., Mikoleit, M., Keddy, K. Typhoid fever and paratyphoid fever: Systematic review to estimate global morbidity and mortality for 2010. Continuous base identification for single-molecule nanopore DNA sequencing. Revolutionising bacteriology to improve treatment outcomes and antibiotic stewardship. The role of prophage-like elements in the diversity of Salmonella enterica serovars. Next-generation sequencing in clinical microbiology. Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak.
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